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Publications

         

 Book/Book Chapters

  • Peter, Isabelle S. (2016) A View on Systems Biology Beyond Scale and Method. In: Philosophy of Systems Biology: Perspectives from Scientists and Philosophers. History, Philosophy and Theory of the Life Sciences. No.20. Springer, Cham, Switzerland, 237-245. pdf
  • Peter, Isabelle S. and Davidson, Eric H. (2016) Implications of Developmental Gene Regulatory Networks Inside and Outside Developmental Biology. In: Essays on Developmental Biology. Current Topics in Developmental Biology. Vol.B. No.117. Academic Press , Cambridge, Mass., 237-251.pdf
  • Peter, Isabelle S. and Davidson, Eric H. (2015) Genomic Control Process. Development and Evolution . Academic Press , San Diego.

 

Publications


  • Sorin Istrail and Isabelle S. Peter. (2019) How does the regulatory genome work? J. of Computational Biology. In press.
  • Isabelle S. Peter. (2018) Methods for the experimental and computational analysis of gene regulatory networks in the sea urchin. In Echinoderms, Part B. Methods in Cell Biology, (151). pp.89-113. pdf.
  • Erkenbrack, Eric M., Davidson, Eric H. and Peter, Isabelle S. (2018) Conserved regulatory state expression controlled
    by divergent developmental gene regulatory networks in echinoids. Development. 145: dev167288 doi: 10.1242/dev.16728. pdf
  • Peter, Isabelle S. and Davidson, Eric H. (2017) Assessing regulatory information in developmental gene regulatory networks. Proceedings of the National Academy of Sciences of the United States of America, 114 (23). pp. 5862-5869. ISSN 0027-8424. .pdf
  • Peter, Isabelle S. (2017) Regulatory states in the developmental control of gene expression. Briefings in Functional Genomics . pdf
  • Cui, Miao and Vielmas, Erika and Davidson, Eric H. and Peter, Isabelle S. (2017) Sequential Response to Multiple Developmental Network Circuits Encoded in an Intronic cis- Regulatory Module of Sea Urchin hox11/13b. Cell Reports, 19 (2). pp. 364-374. ISSN 2211-1247.pdf
  • Peter, Isabelle S. (2016) Eric Davidson. A genomic control odyssey. Developmental Biology, 412 (2). S41-S44. ISSN 0012-1606.pdf
  • Cui, Miao and Siriwon, Natnaree and Li, Enhu and Davidson, Eric H. and Peter, Isabelle S. (2014) Specific functions of the Wnt signaling system in gene regulatory networks throughout the early sea urchin embryo. Proceedings of the National Academy of Sciences of the United States of America, 111 (47). E5029-E5038. ISSN 0027-8424.pdf
  • Li, Enhu and Cui, Miao and Peter, Isabelle S. and Davidson, Eric H. (2014) Encoding regulatory state boundaries in the pregastrular oral ectoderm of the sea urchin embryo. Proceedings of the National Academy of Sciences of the United States of America, 111 (10). E906-E913. ISSN 0027-8424.pdf
  • Faure, Emmanuel and Peter, Isabelle S. and Davidson, Eric H. (2013) A New Software Package for Predictive Gene Regulatory Network Modeling and Redesign. Journal of Computational Biology, 20 (6). pp. 419-423. ISSN 1066-5277.pdf
  • Peter, Isabelle S. and Faure, Emmanuel and Davidson, Eric H. (2012) Predictive computation of genomic logic processing functions in embryonic development. Proceedings of the National Academy of Sciences of the United States of America, 109 (41). pp. 16434-16442. ISSN 0027-8424.pdf
  • Royo, José Luis and Maeso, Ignacio and Irimia, Manuel and Gao, Feng and Peter, Isabelle S. and Lopes, Carla S. and D'Aniello, Salvatore and Casares, Fernando and Davidson, Eric H. and Garcia-Fernández, Jordi and Gómez-Skarmeta, José Luis (2011) Transphyletic conservation of developmental regulatory state in animal evolution. Proceedings of the National Academy of Sciences of the United States of America, 108 (34). pp. 14186-14191. ISSN 0027-8424.pdf
  • Peter, Isabelle S. and Davidson, Eric H. (2011) A gene regulatory network controlling the embryonic specification of endoderm. Nature, 474 (7353). pp. 635-639. ISSN 0028-0836.pdf
  • Peter, Isabelle S. and Davidson, Eric H. (2011) Evolution of Gene Regulatory Networks Controlling Body Plan Development. Cell, 144 (6). pp. 970-985. ISSN 0092-8674.pdf
  • Peter, Isabelle S. and Davidson, Eric H. (2010) The endoderm gene regulatory network in sea urchin embryos up to mid-blastula stage. Developmental Biology, 340 (2). pp. 188-199. ISSN 0012-1606.pdf
  • Peter, Isabelle S. and Davidson, Eric H. (2009) Modularity and design principles in the sea urchin embryo gene regulatory network. FEBS Letters, 583 (24). pp. 3948-3958. ISSN 0014-5793.pdf
  • Peter, Isabelle S. and Davidson, Eric H. (2009) Genomic control of patterning. International Journal of Developmental Biology, 53 (5-6). pp. 707-716. ISSN 0214-6282. pdf